rs27544309 SNP Detail

Summary

• ID
  rs27544309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137095505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAA GCCGAAGTTC TTTGTGACCG
  Y
  CTAAGATCAG AGAGCAACCA CGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37772637	NES09137981	PERLEGEN	MM_PANEL2	f	SNP	C	T	C		C	C	T
ss321363405	CHEV_4_136924109	CHEVERUD	SCREENING_POP	f	SNP				T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27544309					SNP	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772637	NES09137981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137095505 () rs orientation: forward

Symbol	Name	Function Class
Gm69272	predicted gene, 69272	within coordinates
Gm69290	predicted gene, 69290	within coordinates
Rr602600	regulatory region 602600	180 bp distal
Rr602601	regulatory region 602601	within coordinates
Rr602602	regulatory region 602602	1840 bp proximal