rs27544288 SNP Detail

Summary

• ID
  rs27544288
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137115729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT CTTTATCGCG GGACTTCCGG
  K
  TTGTTGCCGG AAGCGGAAGT TGATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37772615	NES09137605	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	T	T		G		G	T	T		T
ss45616772	mCV25232258	ABI	CRAMUS_MOUSE	f	SNP		G	T				T
ss147604050	ENSMUSSNP5286799	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T				T					G
ss321363478	CHEV_4_136944333	CHEVERUD	SCREENING_POP	f	SNP										T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544288					SNP	G	G	T	T	T	T	T	T	T	T	G	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772615	NES09137605	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137115729 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	within coordinates
Cpgi15128	CpG island 15128	within coordinates
Gm52681	predicted gene, 52681	within coordinates
Gm69272	predicted gene, 69272	1541 bp downstream
Rr377264	regulatory region 377264	within coordinates
Rr602608	regulatory region 602608	within coordinates
Rr602609	regulatory region 602609	88 bp proximal
Rr602610	regulatory region 602610	300 bp proximal
Tssr1346	transcription start site region 1346	276 bp upstream
Tssr44122	transcription start site region 44122	251 bp upstream
Tssr44123	transcription start site region 44123	within coordinates