rs27544287 SNP Detail

Summary

• ID
  rs27544287
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137116384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CACCTCAACT AGTAAAACTT
  K
  TTTTTGGGAA AGCTCTGCTG CATTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37772614	NES09137559	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G		T	T	G	G		G
ss45609301	mCV25232529	ABI	CRAMUS_MOUSE	f	SNP		T	G					T	G
ss147604060	ENSMUSSNP5460909	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
ss321363480	CHEV_4_136944988	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544287					SNP	T	T	G	G	G	G	G	T	G	G	G	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772614	NES09137559	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137116384 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	345 bp upstream
Cpgi15128	CpG island 15128	350 bp distal
Gm52681	predicted gene, 52681	within coordinates
Rr377264	regulatory region 377264	within coordinates
Rr602608	regulatory region 602608	568 bp distal
Rr602609	regulatory region 602609	356 bp distal
Rr602610	regulatory region 602610	within coordinates
Tssr1346	transcription start site region 1346	369 bp downstream
Tssr44122	transcription start site region 44122	906 bp upstream
Tssr44123	transcription start site region 44123	643 bp upstream