rs27544278 SNP Detail

Summary

• ID
  rs27544278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137117531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT CTTGCCTCCC CATCCTCTCC
  R
  GGGACTCCTT TCTTCTTGTG ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37772605	NES09137525	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	G	G	G		G	G	G	A		A
ss321363490	CHEV_4_136946135	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544278					SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772605	NES09137525	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137117531 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	1492 bp upstream
Gm52681	predicted gene, 52681	within coordinates
Rr377264	regulatory region 377264	889 bp downstream
Rr602608	regulatory region 602608	1715 bp distal
Rr602609	regulatory region 602609	1503 bp distal
Rr602610	regulatory region 602610	1002 bp distal
Rr602611	regulatory region 602611	1277 bp proximal
Tssr1346	transcription start site region 1346	1516 bp downstream
Tssr44123	transcription start site region 44123	1790 bp upstream