rs27544277 SNP Detail

Summary

• ID
  rs27544277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137117966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT GTAATTAAGA GAAGAAGGAA
  R
  ATCTAGAGAG ATGACTCAGG GGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37772604	NES09137526	PERLEGEN	MM_PANEL2	f	SNP	G	A	A			G	G		A
ss147604106	ENSMUSSNP190942	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss321363493	CHEV_4_136946570	CHEVERUD	SCREENING_POP	f	SNP					A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27544277					SNP	G	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772604	NES09137526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137117966 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	1927 bp upstream
Cpgi15128	CpG island 15128	1932 bp distal
Gm52681	predicted gene, 52681	within coordinates
Rr377264	regulatory region 377264	1324 bp downstream
Rr602609	regulatory region 602609	1938 bp distal
Rr602610	regulatory region 602610	1437 bp distal
Rr602611	regulatory region 602611	842 bp proximal
Tssr1346	transcription start site region 1346	1951 bp downstream