rs27544218 SNP Detail

Summary

• ID
  rs27544218
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137132223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTGGTG TTTCCTAAGT
  CATTTGTTTT GCTTCATTGG TGAGTTGGTC TTACTATGTA GCCCTAGCTA GCCTATGTTG
  ACTGAGCTAG CCTGTAACCC ACAGAGATCC ACCTGCTTCA GCCTCCCTGT GCTGAGATAA
  AAGGTGCATG TTACTACATG TCTTTTCCAA AATCCATTCT TAAAGTGGAC CAGCCCCGGG
  M
  ATCCTCACAG ACACTTTATC CCTGCTGACC TTGTCATTTA TGGTCCCCTT GACACCTCTA
  TGTCATCTGG AAGGACCAGG GTCACAGTTG CCCCCTACCC TAGTGCTGCC CAATGAAATG
  GTCTAGGCTG ATGTCTGACA GCTCCCTGGA GAAAGATGTT GTTGCCTATG TACCACACTG
  TAGGTACCAT TATTTTCTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37772545	NES09137040	PERLEGEN	MM_PANEL2	f	SNP	C			A	C	A	A	C	C	A	A
ss147604812	ENSMUSSNP5066207	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27544218					SNP	C	C	A	A	C	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772545	NES09137040	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137132223 () rs orientation: forward

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Intron
Rr602614	regulatory region 602614	1585 bp proximal