rs27544217 SNP Detail

Summary

• ID
  rs27544217
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137132232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCTAAG TCATTTGTTT
  TGCTTCATTG GTGAGTTGGT CTTACTATGT AGCCCTAGCT AGCCTATGTT GACTGAGCTA
  GCCTGTAACC CACAGAGATC CACCTGCTTC AGCCTCCCTG TGCTGAGATA AAAGGTGCAT
  GTTACTACAT GTCTTTTCCA AAATCCATTC TTAAAGTGGA CCAGCCCCGG GCATCCTCAC
  W
  GACACTTTAT CCCTGCTGAC CTTGTCATTT ATGGTCCCCT TGACACCTCT ATGTCATCTG
  GAAGGACCAG GGTCACAGTT GCCCCCTACC CTAGTGCTGC CCAATGAAAT GGTCTAGGCT
  GATGTCTGAC AGCTCCCTGG AGAAAGATGT TGTTGCCTAT GTACCACACT GTAGGTACCA
  TTATTTTCTA CCTCAACTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37772544	NES09137041	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27544217					SNP	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37772544	NES09137041	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137132232 () rs orientation: forward

Symbol	Name	Function Class
Cela3a	chymotrypsin-like elastase family, member 3A	Intron
Rr602614	regulatory region 602614	1576 bp proximal