rs27544046 SNP Detail

Summary

• ID
  rs27544046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133848057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAAGTCTC AGAGGTCTTC
  CCTCACACTG TGACCCTTCC TAGAAAGGGG TCCTAAGTAG CTGTTTCCCA AGTGCCACCA
  CTGGGCAGCT GCTACCTACA TAGAGCTGAG TGAGTCACGT AGGTCCTGTA GGGCTCACAT
  GACCTGGAGC ATGGTACCTC ACAAGGCCTC CAAGGGCCAT TAAGTCAGGT CCACTGACAT
  R
  ATCTTGAGGC CAGGTCAGGG TTCTTTTTTT TTTTTTTTTT TTTTTTTTTT TCTGAGACAG
  GGTTTCTCTG TATAGCCTTG GCTGTTCTGG AACTCACTCT GTAGACCAGG CTGGCCTCTG
  CCTCCCAAGT GCTGGGATCA AAGGCGTGTG CCACCACGCC CAGCTCAGGT CAGGGTTCTT
  AACCTGCTCA TGCCACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762672	NES09166528	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544046					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762672	NES09166528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133848057 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			within coordinates
Rr370577	regulatory region 370577			788 bp upstream
Rr601565	regulatory region 601565			1179 bp distal
Rr601566	regulatory region 601566			846 bp distal
Rr601567	regulatory region 601567			731 bp proximal
Rr601568	regulatory region 601568			1052 bp proximal
Rr601569	regulatory region 601569			1402 bp proximal
Rr601570	regulatory region 601570			1520 bp proximal
Tssr39532	transcription start site region 39532			1073 bp upstream
Tssr39533	transcription start site region 39533			1096 bp upstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant