rs27544042 SNP Detail

Summary

• ID
  rs27544042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133849170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAACAGG GAAGCCCAGT
  GGCAGGAGGA GCAGGCATAG CCTTTCAGAG AGTAGCCAGT GCCGGGGAGA AGGGAGGGCT
  GAGGGAGGGC CTACAGCTCA GCAGCTGCAG AGACAGCAGG AAACAGCCCC TCCACCTGTA
  CTTCCACTTG GGGGCGAGCA GTTAGATCCC CAGTGCCCTG ACCTACATCC TGCCACAAAA
  Y
  AGCTCTCAGC AAGCTCACAG TCATGTCTGC TGAATGCTTG TCCTCTTTTG TTGTTGTTGT
  TTTAAGATTT ATTTATTTTA TGTATGTGAG TACAGATGGT TGCGAGCCTT CATGTGGTTG
  TTGGGAATTG AATTTTAGGA CCTCTGCTCA CTCCAGTCAA CCCTGCTCCC TCCGGTTGGC
  CCCACTTGCT CAGTCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762668	NES09166488	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544042					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762668	NES09166488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133849170 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			489 bp downstream
Rr370577	regulatory region 370577			within coordinates
Rr601566	regulatory region 601566			1959 bp distal
Rr601567	regulatory region 601567			within coordinates
Rr601568	regulatory region 601568			40 bp distal
Rr601569	regulatory region 601569			289 bp proximal
Rr601570	regulatory region 601570			407 bp proximal
Rr601571	regulatory region 601571			1962 bp proximal
Tssr39532	transcription start site region 39532			24 bp downstream
Tssr39533	transcription start site region 39533			within coordinates
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant