rs27544040 SNP Detail

Summary

• ID
  rs27544040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133849648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG CCATCCTTTT ATGGCACCTT
  Y
  CTGAGTGTCC TGGTTTCTCC CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762666	NES09166447	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	T	T	C		C	T	T	C		T
ss45712113	mCV24805424	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss147518409	ENSMUSSNP29253	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321345430	CHEV_4_133678252	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544040					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762666	NES09166447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133849648 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			967 bp downstream
Rr367739	regulatory region 367739			1925 bp upstream
Rr370577	regulatory region 370577			312 bp downstream
Rr601567	regulatory region 601567			405 bp distal
Rr601568	regulatory region 601568			518 bp distal
Rr601569	regulatory region 601569			168 bp distal
Rr601570	regulatory region 601570			within coordinates
Rr601571	regulatory region 601571			1484 bp proximal
Rr601572	regulatory region 601572			1711 bp proximal
Rr601573	regulatory region 601573			1777 bp proximal
Tssr39532	transcription start site region 39532			502 bp downstream
Tssr39533	transcription start site region 39533			477 bp downstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant