rs27544037 SNP Detail

Summary

• ID
  rs27544037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133850599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAACCCT GTCTGGAAAC AAAACAAAAA ACAAAACAAA
  ACCAAAAAAA AAAAAAAACC CAAAAAAACA AAGTTCAAAG TAAGTATCCA ATAGCTGCCA
  Y
  TGTTAGCTAG TGTGGTGAAA CCTCTGCTCA ATGTGGGAGG GCCCAGAGCT GCCAGGGCAC
  ACAGCAGCCA CAGAGGCTCA TGGGCATCTA TCCCTTTTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762663	NES09166359	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544037					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762663	NES09166359	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133850599 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			1918 bp downstream
Rr367739	regulatory region 367739			974 bp upstream
Rr370577	regulatory region 370577			1263 bp downstream
Rr601567	regulatory region 601567			1356 bp distal
Rr601568	regulatory region 601568			1469 bp distal
Rr601569	regulatory region 601569			1119 bp distal
Rr601570	regulatory region 601570			502 bp distal
Rr601571	regulatory region 601571			533 bp proximal
Rr601572	regulatory region 601572			760 bp proximal
Rr601573	regulatory region 601573			826 bp proximal
Rr601574	regulatory region 601574			1309 bp proximal
Tssr39532	transcription start site region 39532			1453 bp downstream
Tssr39533	transcription start site region 39533			1428 bp downstream
Tssr39534	transcription start site region 39534			1222 bp upstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant