rs27544034 SNP Detail

Summary

• ID
  rs27544034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133851119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCCAATC TCAGAGCTCC CAGTATTTCC AGAATATGAT
  GTTTATGGCT TGCCAACTAA ACAGGTAGCA GGCTTGGCAT GGCATGGCAT GACATAGATG
  R
  CTGCAGAGGC CTCACCTGTT CACTCCCCTG CAGCGCTGCC TCCGGGACAT ACTGGATGGC
  TTCTTTCCCT CAGAGCTGCA GAGGCTGTAT CCTGATGGAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762660	NES09166362	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544034					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762660	NES09166362	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133851119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367739	regulatory region 367739			454 bp upstream
Rr370577	regulatory region 370577			1783 bp downstream
Rr601567	regulatory region 601567			1876 bp distal
Rr601568	regulatory region 601568			1989 bp distal
Rr601569	regulatory region 601569			1639 bp distal
Rr601570	regulatory region 601570			1022 bp distal
Rr601571	regulatory region 601571			13 bp proximal
Rr601572	regulatory region 601572			240 bp proximal
Rr601573	regulatory region 601573			306 bp proximal
Rr601574	regulatory region 601574			789 bp proximal
Tssr39532	transcription start site region 39532			1973 bp downstream
Tssr39533	transcription start site region 39533			1948 bp downstream
Tssr39534	transcription start site region 39534			702 bp upstream
Ubxn11	UBX domain protein 11			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant