rs27544033 SNP Detail

Summary

• ID
  rs27544033
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133851456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCTGTG CAGTGTTGGA
  GAGAGTGGGG TTAATAGTTT CCTCAGGGAA ATAGCCTTCC TAAGAGGGAG CCATCCACGC
  AAGGGACCCA CCCATCCAGG ATGCCCTGCA GGAGGGGGAG CTGGGACCGC AGTGAGGAGG
  CCACGAGGCT CCCCCAAGCT GAGCAGCTGA CAGTGCCCTC TGCTGGCATC TTGAAGGTAC
  W
  ACATTGCCAA TGGGACCACC ATTCTGCCCA CCCTTCCCAG CATTCAGGGC ACCTTAACAG
  CGCAACTGCC AAGGGATCTG TAATGCGCAG TGGGCCTAGT TTCCCCTACA AGCTTCTGAA
  GCCACGTGGT TCGGGTAGAA GGCAGGGCAT GAGTTGCAAA CGCCGAGAAG AGGCAGAGTT
  GGCTGGGCTG CAGGGACAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762659	NES09166363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544033					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762659	NES09166363	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133851456 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367739	regulatory region 367739			117 bp upstream
Rr601569	regulatory region 601569			1976 bp distal
Rr601570	regulatory region 601570			1359 bp distal
Rr601571	regulatory region 601571			within coordinates
Rr601572	regulatory region 601572			76 bp distal
Rr601573	regulatory region 601573			10 bp distal
Rr601574	regulatory region 601574			452 bp proximal
Tssr39534	transcription start site region 39534			365 bp upstream
Ubxn11	UBX domain protein 11			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
				Splice-Site