rs27543408 SNP Detail

Summary

• ID
  rs27543408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134638979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC CTCACTGCTA AGCCCAAGGA
  R
  CCAGTTATTT TAAACCATCA AATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	LG/J	SM/J
ss37759629	NES09162645	PERLEGEN	MM_PANEL2	f	SNP	A			G
ss45708045	mCV22753214	ABI	CRAMUS_MOUSE	f	SNP		A	G		A
ss321349925	CHEV_4_134467583	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	LG/J	SM/J
rs27543408					SNP	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759629	NES09162645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134638979 () rs orientation: forward

Symbol	Name	Function Class
Rr601858	regulatory region 601858	1481 bp proximal
Rr601859	regulatory region 601859	1979 bp proximal
Tmem50a	transmembrane protein 50A	Intron