rs27543230 SNP Detail

Summary

• ID
  rs27543230
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134702293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGAACC GAATTCTCTG
  TTTTCTGTGA CGGGCTCAGT CTTGAGCATG CTGTTACAGT CACAGAAAGT AGACTGAGAT
  AGCAAGCTCT TCAGAGTCAC TGGGCCTTTG GAGGGACTCC TCTCTTACCT AGAGCTGACC
  AGAGATGCTC TGTTCCCCAC AGCCCTGGGT CCCCTTGTGT TTCTTTCCCC ATCAGGTGGG
  M
  CAGGTAAGCT GCTCTCTGGA GTCTGTGACA CAGTAAGGGG TTGTTGACTG ACTATGTAAC
  ACAAGTCAGA CATGTCTCTT GGCAGTCCAC AAGTTCAAGG TCAAGAAAGC CATTGTCAGC
  TCAGACTCTA GCTACTAAGT GGTGGGGCTT ATGTGTGTGT GTGTGTGGGG GGGCTTTTTG
  AGGTGTTTCT ATTGGCCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37759450	NES09160660	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27543230					SNP	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759450	NES09160660	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134702293 () rs orientation: forward

Symbol	Name	Function Class
Gm68620	predicted gene, 68620	within coordinates
Rr601887	regulatory region 601887	186 bp proximal
Rr601888	regulatory region 601888	366 bp proximal