rs27543227 SNP Detail

Summary

• ID
  rs27543227
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134702928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTG GTGGCTCCGA ACACCTCTTG
  W
  GAAAAAGTAG CCTTCAGGAA AAAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37759447	NES09160663	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	T	T	T	T	T	T	T	T
ss45654747	mCV25390532	ABI	CRAMUS_MOUSE	f	SNP		T	A
ss147539283	ENSMUSSNP462315	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27543227					SNP	T	T	A	A	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759447	NES09160663	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134702928 () rs orientation: forward

Symbol	Name	Function Class
Gm68620	predicted gene, 68620	within coordinates
Rr601887	regulatory region 601887	within coordinates
Rr601888	regulatory region 601888	248 bp distal