rs27543226 SNP Detail

Summary

• ID
  rs27543226
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134703029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACC GGGTGATTAC AAGGCAGACC
  S
  GGAGCTCCTG GGAAAGCCAT GGGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37759446	NES09160664	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	G	G	G		G	G		G
ss45711161	mCV25390533	ABI	CRAMUS_MOUSE	f	SNP		G	C				G
ss147539288	ENSMUSSNP5457871	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss321350250	CHEV_4_134531633	CHEVERUD	SCREENING_POP	f	SNP									C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27543226					SNP	G	G	C	C	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759446	NES09160664	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134703029 () rs orientation: forward

Symbol	Name	Function Class
Gm68620	predicted gene, 68620	within coordinates
Rr601887	regulatory region 601887	within coordinates
Rr601888	regulatory region 601888	349 bp distal