rs27543078 SNP Detail

Summary

• ID
  rs27543078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132613295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATTGAT GAAGAGGTAT
  ATTCTCCCAT CAGAGAGATC AGGGACACTC AGGTGGAAGC AGACTGCCAC TGCAAACCCC
  CAAATACCTG CTTTAGGGCA GATCTTGGGT TTGGCCACTG GTCATATGGT ATAAGCTACA
  CCATGAACCA GCACCACAAA CCATTCTCAC CGAAGCCTTA CCAATCATTT GAAGAACTCA
  S
  GAGAAAGAGG CTGCTGAGTT GGAAGTTCTC TGTGGTAAAA TTGATGCTGT TGGTGCTGGT
  TAAGAGCACT GACTGCTCTT CGATACGTTC TGAGTTCAAT TCCCAGCAAC CACATGGTGG
  CTCACAACCA TCTATAATGA GAGCTGATGC TCTCTTCTGG TGTGTCTGAA GATAGCTACA
  GTGTACTCAT ATATACATTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757608	NES09165076	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C		C	G	G	G		G
ss321337133	CHEV_4_132441899	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27543078					SNP	G	G	G	G	G	G	C	G	G	C	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757608	NES09165076	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132613295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	993 bp distal
Gm13033	predicted gene 13033	within coordinates
Gm70413	predicted gene, 70413	within coordinates
Rr601102	regulatory region 601102	1443 bp distal
Rr601103	regulatory region 601103	671 bp distal
Rr601104	regulatory region 601104	1676 bp proximal
Rr601105	regulatory region 601105	1860 bp proximal
Rr601106	regulatory region 601106	1970 bp proximal
Stx12	syntaxin 12	1526 bp upstream
Tssr39426	transcription start site region 39426	1432 bp downstream
Tssr43723	transcription start site region 43723	1483 bp upstream
Tssr43724	transcription start site region 43724	1461 bp upstream
Tssr43725	transcription start site region 43725	1194 bp upstream