rs27543077 SNP Detail

Summary

• ID
  rs27543077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132614000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACGTTAGT AACATGAAGG GCTGTCCCTT CATTCAGTGC
  TCAGGGCTTC TCCAAACAAG CACATTACAA GTGCTTTAAT TCCAGACAAA TAGTGACTTA
  R
  ATATCAGATC TCTCCAGGTT TGTGACATGC TAGACAGGAC AATGAAATGA AATATTTGGG
  GATCCCATTG GATAAGTTTT CCTAGCCATG TATCTCCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37757607	NES09165027	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	G	G	G	A	A	A	G
ss45609069	mCV24822078	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G
ss147478688	ENSMUSSNP7186937	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27543077					SNP	G	G	A	A	A	A	A	G	G	A	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757607	NES09165027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132614000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	1698 bp distal
Gm13033	predicted gene 13033	273 bp downstream
Gm70413	predicted gene, 70413	473 bp downstream
Rr601103	regulatory region 601103	1376 bp distal
Rr601104	regulatory region 601104	971 bp proximal
Rr601105	regulatory region 601105	1155 bp proximal
Rr601106	regulatory region 601106	1265 bp proximal
Tssr43725	transcription start site region 43725	1899 bp upstream