rs27543074 SNP Detail

Summary

• ID
  rs27543074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132614220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGACATG CTAGACAGGA
  CAATGAAATG AAATATTTGG GGATCCCATT GGATAAGTTT TCCTAGCCAT GTATCTCCCC
  AAAGTCCATG ACATCGTGCA AGAAATTTTG ATTTGCATAA AAATGTACCA GACCACCCCA
  ACCCTTGCTT CCTATTCTGC TCTATTTTCA GAACCCAGGC TCAAATATAG GAAAATTAAG
  Y
  AGCCTTGACA TTCAGGTCTG TAGCCAATCA GTGATTTTAA GGGTTTCAAA GTACTTTTAT
  TTCTCCCTCC ACTCCTAACT AAGCAATAAA GTAATATCGT ATTTGGGGGG CACATACTGT
  GTGTGAATCC TTAGGTCACT GATTCATAAA CACTTCACAG TAAGGAAGCA TCCCCATTTT
  TATCTTTAAA CATTTTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757604	NES09165032	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	T		T
ss321337139	CHEV_4_132442824	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27543074					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757604	NES09165032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132614220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	1918 bp distal
Gm13033	predicted gene 13033	493 bp downstream
Gm70413	predicted gene, 70413	693 bp downstream
Rr601103	regulatory region 601103	1596 bp distal
Rr601104	regulatory region 601104	751 bp proximal
Rr601105	regulatory region 601105	935 bp proximal
Rr601106	regulatory region 601106	1045 bp proximal