rs27543073 SNP Detail

Summary

• ID
  rs27543073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132614381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTTCAG AACCCAGGCT
  CAAATATAGG AAAATTAAGT AGCCTTGACA TTCAGGTCTG TAGCCAATCA GTGATTTTAA
  GGGTTTCAAA GTACTTTTAT TTCTCCCTCC ACTCCTAACT AAGCAATAAA GTAATATCGT
  ATTTGGGGGG CACATACTGT GTGTGAATCC TTAGGTCACT GATTCATAAA CACTTCACAG
  Y
  AAGGAAGCAT CCCCATTTTT ATCTTTAAAC ATTTTTGGTC TGGTTTACTT TTTTATTTGT
  TTTTCCAAAC AGGGTTTCTC TGTGTAACCC TGGCTGTCCT GGAACTTACT CTGTAGACCA
  AGCTGGCCTC GAACTCAAAG ATCTACCTAC CTCTTTGCTC TGCCTCCCAA GTGCCAGGAT
  TAAAAGTAAT GGCATTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757603	NES09165034	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	T		T
ss321337143	CHEV_4_132442985	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27543073					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757603	NES09165034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132614381 () rs orientation: forward

Symbol	Name	Function Class
Gm13033	predicted gene 13033	654 bp downstream
Gm70413	predicted gene, 70413	854 bp downstream
Rr601103	regulatory region 601103	1757 bp distal
Rr601104	regulatory region 601104	590 bp proximal
Rr601105	regulatory region 601105	774 bp proximal
Rr601106	regulatory region 601106	884 bp proximal