rs27543070 SNP Detail

Summary

• ID
  rs27543070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132615682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTAATGC AAAGAGCAAG
  AGAAGAAGAA ATTCTATATC TTCTGAGTGT GCACACGCAG GCTCACGCAC CTGCGAATAT
  ATGTGCATGC ACCATTCACA CACACAACAA CACATACACA AAGAAACTAA TGCCTCCTTA
  TGATTCATCA CTTTATGTCA AACCCTAGGT TCCATTGCAC AGCTTTAACA GATTCGACTC
  Y
  TCACATGAGG CCCTGAAATG TATCAGTTTG AATGTAGTCA TAAACTCTGA GTCACTAATA
  ATACCCTGAT GTCACATTAA GGACAGAAAT CAAACACTTC CCCTGTGTGT CCTTTAACTG
  AGAGTGAGCA TCTTTTGGCT GAAGCCTCTC CTGCACTCTC CCTGTGCCTT CCATTGTCTG
  TCTCAAAGGG CTGCTGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757600	NES09165007	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T		T	C	C	C		C
ss321337158	CHEV_4_132444286	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27543070					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757600	NES09165007	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132615682 () rs orientation: forward

Symbol	Name	Function Class
Gm13033	predicted gene 13033	1955 bp downstream
Rr601104	regulatory region 601104	690 bp distal
Rr601105	regulatory region 601105	506 bp distal
Rr601106	regulatory region 601106	396 bp distal