rs27542941 SNP Detail

Summary

• ID
  rs27542941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTCTGAAT TCAGTAAAAA GCTGCAGACT GGGTACTAAC
  TGTTGCTAGC AAGAGGCCTG GGTGAGTCAT GTAACTCTCT GGACCTTCTC CTCTATATGC
  R
  TATCACTTCC CTGCTGTTGA TGTGGGAGTA GGAATCTGTA TGAACTACTC ATAGATTTTA
  AAACAAATAT ATCATGAATA AGCTCTAGAT TGGTCGTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757462	NES09163968	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	A	G		G	G	G	G		A
ss45663688	mCV24820310	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G
ss147479314	ENSMUSSNP2496099	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321337424	CHEV_4_132476850	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542941					SNP	A	A	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757462	NES09163968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	1047 bp proximal
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1744 bp upstream
Rr601111	regulatory region 601111	690 bp proximal
Rr601112	regulatory region 601112	1548 bp proximal
Rr601113	regulatory region 601113	1567 bp proximal
Rr601114	regulatory region 601114	1793 bp proximal
Tssr43726	transcription start site region 43726	208 bp downstream
Tssr43727	transcription start site region 43727	1552 bp downstream
Tssr43728	transcription start site region 43728	1612 bp downstream
Tssr43729	transcription start site region 43729	1655 bp downstream
Tssr43730	transcription start site region 43730	1670 bp downstream
Tssr43731	transcription start site region 43731	1685 bp downstream
Tssr43732	transcription start site region 43732	1692 bp downstream