rs27542940 SNP Detail

Summary

• ID
  rs27542940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTATATGCA TATCACTTCC CTGCTGTTGA TGTGGGAGTA
  GGAATCTGTA TGAACTACTC ATAGATTTTA AAACAAATAT ATCATGAATA AGCTCTAGAT
  K
  GGTCGTTAGC TCTCTAGGTA AGAGTCCAGC TGGTCCGTCT GCTGTTGTGG GATAATGAGA
  AGGATCACTT GTGATACGAA GGCAAAAGAT TAAAGCTGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37757461	NES09163969	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	T	G	T	T	T	G	G	G	T
ss147479322	ENSMUSSNP2161791	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27542940					SNP	T	T	G	G	G	G	G	T	G	T	T	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757461	NES09163969	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	956 bp proximal
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1653 bp upstream
Rr601111	regulatory region 601111	599 bp proximal
Rr601112	regulatory region 601112	1457 bp proximal
Rr601113	regulatory region 601113	1476 bp proximal
Rr601114	regulatory region 601114	1702 bp proximal
Tssr43726	transcription start site region 43726	117 bp downstream
Tssr43727	transcription start site region 43727	1461 bp downstream
Tssr43728	transcription start site region 43728	1521 bp downstream
Tssr43729	transcription start site region 43729	1564 bp downstream
Tssr43730	transcription start site region 43730	1579 bp downstream
Tssr43731	transcription start site region 43731	1594 bp downstream
Tssr43732	transcription start site region 43732	1601 bp downstream