rs27542937 SNP Detail

Summary

• ID
  rs27542937
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcggaaaca aacaagaAAA ATGTTTAGAT
  CAAAGTTTTT ATGTCCAAGG GGGCCTTCAA ACACTATCTT TCGGACTCAG TAAACCCAAG
  TGGCTTAAGG AAAGTATGTG GGCATCTTTT TGGGGGGACG CGGGGAGGTG AACTACACAC
  M
  GCGGACGGAC ACAGACACAC ATTCTGTATC TGAAATATCT GAGGATCTGT CAACGGCAAC
  TCTGCACGAG CTTGCCGACT TAACTGTTGC TCTCTTGAAC CGACGAGGTG GGAGGAAGTT
  ATATATAAAA ACGCTGGCAT TTCAGGGGTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757458	NES09163953	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C		C	A	A	A		A
ss321337433	CHEV_4_132477527	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542937					SNP	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757458	NES09163953	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648923 () rs orientation: forward

Symbol	Name	Function Class
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1067 bp upstream
Rr601111	regulatory region 601111	13 bp proximal
Rr601112	regulatory region 601112	871 bp proximal
Rr601113	regulatory region 601113	890 bp proximal
Rr601114	regulatory region 601114	1116 bp proximal
Tssr43726	transcription start site region 43726	465 bp upstream
Tssr43727	transcription start site region 43727	875 bp downstream
Tssr43728	transcription start site region 43728	935 bp downstream
Tssr43729	transcription start site region 43729	978 bp downstream
Tssr43730	transcription start site region 43730	993 bp downstream
Tssr43731	transcription start site region 43731	1008 bp downstream
Tssr43732	transcription start site region 43732	1015 bp downstream