rs27542936 SNP Detail

Summary

• ID
  rs27542936
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132648949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTAAACC CAAGTGGCTT AAGGAAAGTA TGTGGGCATC
  TTTTTGGGGG GACGCGGGGA GGTGAACTAC ACACAGCGGA CGGACACAGA CACACATTCT
  K
  TATCTGAAAT ATCTGAGGAT CTGTCAACGG CAACTCTGCA CGAGCTTGCC GACTTAACTG
  TTGCTCTCTT GAACCGACGA GGTGGGAGGA AGTTATATA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37757457	NES09163954	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	G	T	G	G	G	T	T	T	G
ss45657783	mCV24820041	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss147479330	ENSMUSSNP2693150	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27542936					SNP	G	G	T	T	T	T	T	G	T	G	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757457	NES09163954	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132648949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	344 bp proximal
Fam76a	family with sequence similarity 76, member A	Intron
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	1041 bp upstream
Rr601111	regulatory region 601111	within coordinates
Rr601112	regulatory region 601112	845 bp proximal
Rr601113	regulatory region 601113	864 bp proximal
Rr601114	regulatory region 601114	1090 bp proximal
Tssr43726	transcription start site region 43726	491 bp upstream
Tssr43727	transcription start site region 43727	849 bp downstream
Tssr43728	transcription start site region 43728	909 bp downstream
Tssr43729	transcription start site region 43729	952 bp downstream
Tssr43730	transcription start site region 43730	967 bp downstream
Tssr43731	transcription start site region 43731	982 bp downstream
Tssr43732	transcription start site region 43732	989 bp downstream