rs27542748 SNP Detail

Summary

• ID
  rs27542748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132294353 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        TGGAAAAGGG TAACACTCTT GGTAAAATGC AATGGACTTA
  ACAAACTGGA AAGGGCCCTT GCACAAGTGA CTGACATATT TTCTGGCCCA GCCAGCTCAA
  R
  TGTTCTGCAA AGCTAGTGGA AGGTCCTACT CCCGTAGAGC TAAACACCCA CTCCCGCTCC
  GACTCCCACT CCCACACAAA TACACATGGA AGCTTCTTCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37754568	NES09161300	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
ss63333690	NES17507172	PERLEGEN	MM_PANEL2	r	SNP	C	C	C		C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27542748					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754568	NES09161300	PERLEGEN	MM_PANEL	f	SNP	A/G
ss63333690	NES17507172	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132294353 () rs orientation: reverse

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601019	regulatory region 601019	1530 bp distal
Rr601020	regulatory region 601020	269 bp proximal
Tssr39389	transcription start site region 39389	1674 bp downstream
Tssr39390	transcription start site region 39390	1280 bp upstream
Tssr39391	transcription start site region 39391	1367 bp upstream
Tssr39392	transcription start site region 39392	1455 bp upstream
Tssr39393	transcription start site region 39393	1536 bp upstream
Tssr39394	transcription start site region 39394	1563 bp upstream
Tssr39395	transcription start site region 39395	1618 bp upstream
Tssr39396	transcription start site region 39396	1771 bp upstream
Tssr43688	transcription start site region 43688	422 bp downstream
Tssr43689	transcription start site region 43689	449 bp downstream