rs27542740 SNP Detail

Summary

• ID
  rs27542740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132293333 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        TGACCCAAGG TGACTAGGGT GAGGGCAGAG CTGGCCTATG
  GCTCACTGTC CGCCCCTAAC AAGTACAGTT TTGATGATAT CTTTTCATCT ACTTAGTACA
  R
  ATCTGGGAGA TGTTGTGGAG GTCTCATGTA GCCCAAGCTG GCCTTCAACT TGCTACATAG
  CTAAAGCTGA CCTTGAACTC CTGATCTTTA CTGCCTCTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37754560	NES09161280	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27542740					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754560	NES09161280	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132293333 () rs orientation: reverse

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	1945 bp distal
Rr601016	regulatory region 601016	1725 bp distal
Rr601017	regulatory region 601017	1897 bp distal
Rr601018	regulatory region 601018	1742 bp distal
Rr601019	regulatory region 601019	510 bp distal
Rr601020	regulatory region 601020	1289 bp proximal
Tssr39386	transcription start site region 39386	1946 bp downstream
Tssr39387	transcription start site region 39387	1929 bp downstream
Tssr39388	transcription start site region 39388	1812 bp downstream
Tssr39389	transcription start site region 39389	654 bp downstream
Tssr43688	transcription start site region 43688	1442 bp downstream
Tssr43689	transcription start site region 43689	1469 bp downstream