rs27542736 SNP Detail

Summary

• ID
  rs27542736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292675 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        GTCCTTTATC CCTCAGTATC CCCCAAGTCT TCGGCCAGCA
  GCTCTGGTTT GTCGGCATCA CCCCAAGACT TCCTGCAAGG GAGAGATAGC CAGTACCACA
  Y
  TGGCCTTTGT CCCCAACACC TGAGATTTAA CGTGGCAACC TTTTGTGGAC CTTTGTACCA
  GCCACCCAGT TATCAACATC CTCTGCAGTG GGTGTGGTCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37754556	NES09161223	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27542736					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754556	NES09161223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292675 () rs orientation: reverse

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	1287 bp distal
Rr601016	regulatory region 601016	1067 bp distal
Rr601017	regulatory region 601017	1239 bp distal
Rr601018	regulatory region 601018	1084 bp distal
Rr601019	regulatory region 601019	127 bp proximal
Rr601020	regulatory region 601020	1947 bp proximal
Tssr39381	transcription start site region 39381	1883 bp downstream
Tssr39382	transcription start site region 39382	1854 bp downstream
Tssr39383	transcription start site region 39383	1771 bp downstream
Tssr39384	transcription start site region 39384	1736 bp downstream
Tssr39385	transcription start site region 39385	1627 bp downstream
Tssr39386	transcription start site region 39386	1288 bp downstream
Tssr39387	transcription start site region 39387	1271 bp downstream
Tssr39388	transcription start site region 39388	1154 bp downstream
Tssr39389	transcription start site region 39389	within coordinates