rs27542734 SNP Detail

Summary

• ID
  rs27542734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292347 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   acagagaagg tgtataactt ctccaaagtc
  acacagctaa taaagcaaat ggaggtctgc tcacagacct ctaagccctt gcctcccgtc
  ctcaccatcg cctcccAGAA GTTAAGGCTA AGATGGCTCC ATCTCACTCT CAGAAAAGAG
  R
  GGTTCCCTTG GAGTGTCCCA GCACCTGATC Acaggccaga aatacctacc actcagaagg
  ctgagagagg gttaaggact aagactagag gatggagaga tggcacaggg attaagcgcc
  ctggacactc ttggaaagga cccaggttt                                  
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754554	NES09161206	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		A	G	G	G		G
ss321334509	CHEV_4_132120951	CHEVERUD	SCREENING_POP	r	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542734					SNP	G	G	G	G	G	G	G	G	G	A	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754554	NES09161206	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292347 () rs orientation: reverse

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	959 bp distal
Rr601016	regulatory region 601016	739 bp distal
Rr601017	regulatory region 601017	911 bp distal
Rr601018	regulatory region 601018	756 bp distal
Rr601019	regulatory region 601019	455 bp proximal
Tssr39381	transcription start site region 39381	1555 bp downstream
Tssr39382	transcription start site region 39382	1526 bp downstream
Tssr39383	transcription start site region 39383	1443 bp downstream
Tssr39384	transcription start site region 39384	1408 bp downstream
Tssr39385	transcription start site region 39385	1299 bp downstream
Tssr39386	transcription start site region 39386	960 bp downstream
Tssr39387	transcription start site region 39387	943 bp downstream
Tssr39388	transcription start site region 39388	826 bp downstream
Tssr39389	transcription start site region 39389	324 bp upstream