rs27542630 SNP Detail

Summary

• ID
  rs27542630
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132253615 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TAGCTGTCGG TAGTAGCAAA
  CACCTCAGAA TTCAGAAGAC TGAGTCAAGA GAATTGGAGG CCAGCCAGCA ACACAGTAAG
  ACCGTACCTC AGCAAAATAA AAATCAAAAC AATTTGGTCC TGGACATTGG TATTTTTAAA
  AATCTCCCTG TGTTTCCCCC CACCAAACTG TGGCTGGAAC TGAGAGTCAC TGGCCTGGCT
  S
  TTTGAGCAGT TTATTCTCTG TCCAAGACAT TGAGCTGAAG GCCCCAACAA GGACAAAAAT
  TCAGTTTCTA CCTTGTCACC AAGAGGTATA CTCTATTTTA AGGGTAGCAT CTGTGTTTTG
  TTTTGGTTTT TGTCTTTTGT TTTTCGAGAC AGGGTTTCCC TGTATAGCCC TGGCTGTCCT
  GGAACTCACT TTGTAGATCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37754450	NES09160061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G
ss37758764	NES09152104	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27542630					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754450	NES09160061	PERLEGEN	MM_PANEL	f	SNP	C/G
ss37758764	NES09152104	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132253615 () rs orientation: reverse

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377208	regulatory region 377208	884 bp downstream
Rr377209	regulatory region 377209	844 bp upstream
Rr601000	regulatory region 601000	1145 bp distal
Rr601001	regulatory region 601001	476 bp proximal
Rr601002	regulatory region 601002	568 bp proximal