rs27542627 SNP Detail

Summary

• ID
  rs27542627
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132252717 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   ccacatctcc agccccCTat cacacttcta
  ccttactctc ttgagaaggg gtctctcacg ggacctggaA TGCTAGCTCC TTCCTCATGC
  TCTTCCCAGA GAGCTGTATA TAATTCCCGC CTGCCTGTAC AAGGCCTGGT ACTCGGTAGA
  K
  GTGCTTGAAT ATACAATCTG TGGAAGGTTA ACTGAAGGGC GGGATTCAAT CTGTGCAGCC
  ATAGGGAAGT GCTTATACAT GCTAAAGTCA GACTTTCTGG TGGTATGGTT GTTTTGGGCc
  agtcatattc taaacaagtt tagtaaatg                                  
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754447	NES09160014	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G		G	T	T	T		T
ss37758767	NES09152209	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	A	A	A	A	C		C	A	A	A		A
ss321334095	CHEV_4_132081321	CHEVERUD	SCREENING_POP	r	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542627					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754447	NES09160014	PERLEGEN	MM_PANEL	f	SNP	G/T
ss37758767	NES09152209	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132252717 () rs orientation: reverse

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377208	regulatory region 377208	within coordinates
Rr377209	regulatory region 377209	1742 bp upstream
Rr601000	regulatory region 601000	247 bp distal
Rr601001	regulatory region 601001	1374 bp proximal
Rr601002	regulatory region 601002	1466 bp proximal