rs27542608 SNP Detail

Summary

• ID
  rs27542608
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132245462 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TAATGCCAGC TGCACAAAGT
  AGTAGACCTT GTCTCTTAAG CGGGAGGGGG GAGTTAATGA TTACCTAACT ACTAACCTAA
  AGGAGAGGAG AAAAGTCGGG AAAGCGAGTG AGAAACTCCT GTGGTTGCCT TATGCCTTGA
  CCCCCGAGCA AAGGTCAATA AGTACTTGCA AAAGTAGAAG GAAGTTGAGG ATACTGAGCC
  W
  AACATGCTCA AGGCCCAGGG CTTGGTCCCC AACACAAGAA AGGGGGGTGG GCGAGATGAC
  TCAGTGCTTA AGGGCACTTG CCAACCCCAT AAGGACCTGA ATTGCACCCC AGTATCAAAT
  GGTAGAAGGA GAAAACTGAC TCCCACCACA GTGCCTTCGG GCTTCCACAG GTGTGCCTTG
  ACACACATGA GAACACACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754428	NES09159856	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A		T	T	T		A
ss37758812	NES09152396	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	A	T		A	A	A		T
ss321334002	CHEV_4_132074066	CHEVERUD	SCREENING_POP	r	SNP								A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542608					SNP	T	T	T	T	T	T	A	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754428	NES09159856	PERLEGEN	MM_PANEL	f	SNP	A/T
ss37758812	NES09152396	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132245462 () rs orientation: reverse

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
Rr377207	regulatory region 377207	1836 bp downstream
Rr600999	regulatory region 600999	within coordinates