rs27542604 SNP Detail

Summary

• ID
  rs27542604
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132244702 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGAACTTATG ATCTGCCTGC
  CTCAGCCTCC CCAGGAGCTA GGTTTCCAGG CGTGGGCCGC CAGGCTCAGC TATATTGAGG
  AATGGGAGGT AGATCTTTCC TGGAGGTTTT GGACTCAGAT TCCTATAGGT AATGTGGACA
  AGTTAAATGC TCCGTGTGCT TCATGATTGC TGAAAACAGT ACAAGACAAG TCTAGCTACC
  S
  GCTGATGACC TCAGTGTCAC CAGAGAAATC ATACCTAGGT GAAAAATCAA ATGTTTTTTG
  TTAAGACAAG GTCTCGGGCT GGAGAGATGG CTCAGTGATT AAGAGCACCG ACTGCTCTTC
  CGAAGGTCCT TAGATATAAT AATAAACAAA TCTTTTTTTT TTATTATTAT ATGTAAATAT
  ACTGTAGCTG TCCTCAGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754424	NES09159803	PERLEGEN	MM_PANEL2	f	SNP	C	C		C	C	C	C	C	G		G	C	C	C		G
ss37758818	NES09152390	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	G	G	C		C	G	G	G		C
ss321333983	CHEV_4_132073306	CHEVERUD	SCREENING_POP	r	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542604					SNP	C	C	C	C	C	C	C	C	G	C	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754424	NES09159803	PERLEGEN	MM_PANEL	f	SNP	C/G
ss37758818	NES09152390	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132244702 () rs orientation: reverse

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	1312 bp downstream
Rr377207	regulatory region 377207	1076 bp downstream
Rr600998	regulatory region 600998	1363 bp distal
Rr600999	regulatory region 600999	383 bp proximal
Tssr39372	transcription start site region 39372	1563 bp downstream
Tssr43681	transcription start site region 43681	1957 bp upstream