rs27542603 SNP Detail

Summary

• ID
  rs27542603
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243792 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGAAA TCAATAGTTG TTCCTTTCTG
  K
  TCTTTAAACA ACAAACAGGC TTCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37754423	NES09159702	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		G		T	T	T	G
ss37758819	NES09152439	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	A	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27542603					SNP	T	T	T	T	T	T	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754423	NES09159702	PERLEGEN	MM_PANEL	f	SNP	G/T
ss37758819	NES09152439	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243792 () rs orientation: reverse

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	402 bp downstream
Rr377207	regulatory region 377207	166 bp downstream
Rr600995	regulatory region 600995	1692 bp distal
Rr600996	regulatory region 600996	1191 bp distal
Rr600997	regulatory region 600997	1530 bp distal
Rr600998	regulatory region 600998	453 bp distal
Rr600999	regulatory region 600999	1293 bp proximal
Tssr39372	transcription start site region 39372	653 bp downstream
Tssr43681	transcription start site region 43681	1047 bp upstream