rs27537486 SNP Detail

Summary

• ID
  rs27537486
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119902006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCTTCT GTATTTCTAT
  GTAGCCTAGG ATAGCCCTGA AGGCCTAGTC CTTCTGGCTT CACTTCCCAA GTGCTGGGAT
  CAGAGGCATT AGTTCCCGTG CTCAGGAACA TGAGCATTTT AAGTAAAGAC AGTTAAAAAG
  AAAGACAGAA AGAAGAAAAG GAAGTAAACC TCTGATGTAT AGGATTAGTG TGGTGCTGAG
  K
  CATGGTGGGC ATCACACCTG GTGCCTAGCA CCTTGTGAGT GCCCCATGAA CATCTCCCCC
  GTCTTCTTTT TTCCTCCATG GAGGTTGGTC CTTCCTCCAC CCCTGAATTT CCACTTAGTG
  TTTTCCCAAA CTTAGTAAGT ATTCAGTGGC GATTACAACA GTGTCAGCCA CTCTCCTGCG
  GTGTCACCCA CGTAGAGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714321	NES09201199	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	G		T	T	G	T
ss147340779	ENSMUSSNP3024802	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27537486					SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714321	NES09201199	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119902006 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598717	regulatory region 598717			150 bp proximal