rs27537484 SNP Detail

Summary

• ID
  rs27537484
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119902260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCCGTC TTCTTTTTTC
  CTCCATGGAG GTTGGTCCTT CCTCCACCCC TGAATTTCCA CTTAGTGTTT TCCCAAACTT
  AGTAAGTATT CAGTGGCGAT TACAACAGTG TCAGCCACTC TCCTGCGGTG TCACCCACGT
  AGAGCCACTT GTTCAGAGAA CCCATCTGCC TCTCACCTAG ACAGCCTCAA GGCTCCTTTC
  K
  TCATTGTGAA GAGAAGGCTG TCATCTAGCC ACCCCTTCCA CGCCTCCTGT CTCTCCCACC
  TTGCAGTATG GGCCCTCTGT CACCCCACAT GCCCAGGGTG AACCTCAGTC GTGTGGATCA
  TGTCTGGCTC GTTTCTCTTC TGTTTCTGTT CACAGCCAGG CTTTCCAACC CCCGGGGATG
  TGGGCTTTCC TGGTCCCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714319	NES09201201	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	G	T	T	G		T	T	G	T
ss147340794	ENSMUSSNP3922932	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27537484					SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714319	NES09201201	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119902260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598717	regulatory region 598717			within coordinates