rs27537473 SNP Detail

Summary

• ID
  rs27537473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119904441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGTGGCT CTTCATGAGT
  GCCAGAGGCT GGCCCAGGTC CATCCCCAGA CCTTAGAATT GGGTACAAGA TCAGAACTGT
  ATCCCAGTAG CTGGCAGCAA GAAGGTAGAG AAGAAACAGT TGGAAGCTGG TAGAGGTGCA
  GCTAGGGAGG AGGCTCCGCC CTGCAGCCTG ATCCTCGGGT ACCAATCACT GCCCTTGCAT
  Y
  GTCTCCCTGG AGCCAGGCTG CAGAGGACTG TTTCCCAAGT CTGGGAGAGG GCCTCCGGTG
  GGGCCTTCCC CCATGGGGTG GAGGGAGGAG TGAGTAGGGA GGAAGGGATG GGCAGGGGAT
  GCTTTTCATC TCATTGGAGT TATTTCTGGC TCTGCTCAGG CTACTGCAGT CTCTGTGGAA
  ACTGTCTGTG CCCAGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714308	NES09201159	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27537473					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714308	NES09201159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119904441 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598717	regulatory region 598717			1428 bp distal