rs27533309 SNP Detail

Summary

• ID
  rs27533309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116530405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCATTTC CTTATCTAAA
  CAGAGTGTGG GTGAAAGTTA ACACTCTAGC TATATTATTA ATAACATTTT CCCTACTTCA
  CTCTGGTGAC AGGGGGAGCT GTGTGGGTGC TGAGCCTTGA GGCTCTTGAG TCTTTTTCTA
  TTATTATTAT TATTTTAATG GAAATCTAGC AGATAAACTG TTGCTACAAA GCCAGTCTTT
  Y
  AGCTAAAGGC CAATGACAAC CAAGTTGCTT CGCTTGGTTG TGTTATTGTC CAATCATAGA
  AGAGATATTT GAGTTCATTT CTTGAAATTT CAGATATCCA AGAACTGAGG TACTGGGTGT
  TTGATAAACA TTGATTAAGT TTCACGTAAG CCCAGGCTCA CTGTGAGATC TTAGGAACCC
  AACTAGCTCC TTCATTAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694345	NES09220255	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27533309					SNP	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694345	NES09220255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116530405 () rs orientation: forward

Symbol	Name	Function Class
Gm25137	predicted gene, 25137	945 bp upstream
Rr597955	regulatory region 597955	1621 bp distal
Rr597956	regulatory region 597956	within coordinates
Tssr38541	transcription start site region 38541	1778 bp upstream