rs27530631 SNP Detail

Summary

• ID
  rs27530631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117283183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAGGAC AGAGTCCCAA
  GGAGCACCGA GGGCTTCCAG ATGAAAGGCA TCCTACCATG CTCTGCGTAC CCACACTTAC
  CAGAATCTGT CTATGGCGGT CATACCTACC GATTTTTATC ATGGAGTTAT CTGTAATCTG
  CATCATCTCT TAGTATCTAA CTCTTGTCTG ATCCTAATTT GTATTATATA AAACATTTCA
  Y
  ACCATGTAGG CCTCTCACCT ACCTCTTAAG CTTTGACTTT TACGACTCCT GCAGTATTTT
  ATTTCATTTT TTGAGCTAAG GTCTCACCAT GTAGCCCTGG TTAGCCTGGA ACTTGCTTAT
  GTAGACAGGC TGGCCTGGAA CTCACAGAGA TCCATCTGCC TGCCTCCACC TACCTCTGCC
  TCTAGAGTAC TAGCAGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37692361	NES09214137	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27530631					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692361	NES09214137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117283183 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598148	regulatory region 598148			1546 bp proximal