rs27530628 SNP Detail

Summary

• ID
  rs27530628
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117283385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTAGGC CTCTCACCTA
  CCTCTTAAGC TTTGACTTTT ACGACTCCTG CAGTATTTTA TTTCATTTTT TGAGCTAAGG
  TCTCACCATG TAGCCCTGGT TAGCCTGGAA CTTGCTTATG TAGACAGGCT GGCCTGGAAC
  TCACAGAGAT CCATCTGCCT GCCTCCACCT ACCTCTGCCT CTAGAGTACT AGCAGTATTT
  W
  AAAACTTGCG GATCCCTGAA CATCCCATGT TCACTGTCTA AGGGCTGCTC TCTCTCTGGA
  ATTTCAGAAT ATTCCATATC AGTACATCAG TTCAGCAAGT ACTAACGGGG GTAACCACGC
  GCCCACCACT TGGGCCCATT ACACTTTGTT CACTGTTTGC ATCTCCAATG TAAACCTAAG
  AGTTTATTCC CGAATCCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692358	NES09214113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27530628					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692358	NES09214113	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117283385 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598148	regulatory region 598148			1344 bp proximal