rs27530610 SNP Detail

Summary

• ID
  rs27530610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117286245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGACCC TTCAAGATTC
  TCTTTTCTTT CACACGCTGG CTATTATATC CAGCAAAATA TCCCAAACTC TAGAGGATAG
  GTAAACCTGA AGTTCAAAGT CACCACGTTG AGGCTGACAT ACAAACACAA TTCGCTTGAC
  ATACTAATAA GTCCCCACTG GTGGATAACT AAACCCTGAG CGTGGGAGGA CCAACGCCTT
  Y
  CTCAGGAGGC CCTACAGCTC GTGAAGGACA TGGACAGAGG CCAACAGAGC CTGGAGCTGG
  GAAGCAGGGG CTATTGTTCA GAGTTCTTCT ACTGTCTGCA TAGGATCAAG AGCATAAGAG
  AGTCAGGAGA GCCAAGGCTA GCTGTGGGCC TGACTCCTGG AAATGACATT CACATGTAGA
  CTTGACAAGC GTCACTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37692340	NES09214002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27530610					SNP	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692340	NES09214002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117286245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377059	regulatory region 377059			351 bp upstream
Rr598148	regulatory region 598148			1229 bp distal
Rr598149	regulatory region 598149			647 bp proximal