rs27530609 SNP Detail

Summary

• ID
  rs27530609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117286285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTATATC CAGCAAAATA
  TCCCAAACTC TAGAGGATAG GTAAACCTGA AGTTCAAAGT CACCACGTTG AGGCTGACAT
  ACAAACACAA TTCGCTTGAC ATACTAATAA GTCCCCACTG GTGGATAACT AAACCCTGAG
  CGTGGGAGGA CCAACGCCTT TCTCAGGAGG CCCTACAGCT CGTGAAGGAC ATGGACAGAG
  R
  CCAACAGAGC CTGGAGCTGG GAAGCAGGGG CTATTGTTCA GAGTTCTTCT ACTGTCTGCA
  TAGGATCAAG AGCATAAGAG AGTCAGGAGA GCCAAGGCTA GCTGTGGGCC TGACTCCTGG
  AAATGACATT CACATGTAGA CTTGACAAGC GTCACTCTGC AAGGCTTTCA GAAGTTTCAC
  AGCTAGAAAG GTAATAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37692339	NES09214003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27530609					SNP	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692339	NES09214003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117286285 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377059	regulatory region 377059			311 bp upstream
Rr598148	regulatory region 598148			1269 bp distal
Rr598149	regulatory region 598149			607 bp proximal