rs27530607 SNP Detail

Summary

• ID
  rs27530607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117286435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT TCACATGTAG ACTTGACAAG
  Y
  GTCACTCTGC AAGGCTTTCA GAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37692337	NES09214005	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	T	T	C		C		T	T		T
ss147288269	ENSMUSSNP7178879	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321279440	CHEV_4_117101843	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27530607					SNP	C	C	C	C	T	T	T	C	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692337	NES09214005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117286435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377059	regulatory region 377059			161 bp upstream
Rr598148	regulatory region 598148			1419 bp distal
Rr598149	regulatory region 598149			457 bp proximal