rs27530601 SNP Detail

Summary

• ID
  rs27530601
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117286856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTTTTT GGGGTTGGAA
  GTAAGGTTGT CCACTAGCTC TGAAATTCTC TAAGTCCAGA AGAGCCTCCC ACATCCCTGA
  ACCCCTTCAG CCAGCTCAGG GTCAGGAGTA TCTGCTGATT GTAGCACTGT ACAGTTACAA
  ACGAGCGTAT TGTACAGTTA CGGACAAGGG CACTGTATAG GCTATAGCAA GGACACTGTA
  S
  CGATTATAAA CTAGGTATTT CTAAGCACAA TACCCCTGCC TCTCCTCTGT TAAGATGCTT
  CTAAAATAGC ACTCAGTCTA GCGGTAGCCC CACCCCATGC TCCCGTTCAG CACCCCTGGC
  CCCTTCACAA AGAGCAGGCA AAGCCAGCCA GCCTCGGGCA GACAGAACCA GATCCTTCAA
  GGGTCTATAT TAATGTGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37692331	NES09214011	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27530601					SNP	C	C	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692331	NES09214011	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117286856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377059	regulatory region 377059			within coordinates
Rr598148	regulatory region 598148			1840 bp distal
Rr598149	regulatory region 598149			36 bp proximal