rs27526677 SNP Detail

Summary

• ID
  rs27526677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118127261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTATTCC AAGCTCCGGG AATAACAAAA AAATAAAAAC
  GATACTGGAG AACTGCTTTC TGGGAAGTGC CCCAGACTCT CCTAGAGCCT TTCCATCTAC
  S
  CTAAGCCTTA GGCAGACCCC GGGACTCCTC CTCTTCCCTA CCCCTGCATT CCAACAGCCC
  CAAAGGCCTG GACATTCCAG CTCCTGAGAG GCTCTGGAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37689302	NES09211671	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	G
ss147302755	ENSMUSSNP271950	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27526677					SNP	C	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689302	NES09211671	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118127261 () rs orientation: forward

Symbol	Name	Function Class
Ptprf	protein tyrosine phosphatase receptor type F	Intron
Rr598358	regulatory region 598358	within coordinates
Rr598359	regulatory region 598359	736 bp proximal
Rr598360	regulatory region 598360	840 bp proximal
Tssr43045	transcription start site region 43045	327 bp upstream