rs27526672 SNP Detail

Summary

• ID
  rs27526672
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118129858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAGCTCC GGAGCAGCCA
  GCAGGAACAA ACCTGGAAGC TGTGTGGGGG CTGGCCTGTG CCCAAGGCCT GGGGCCATCA
  GGGAGGTACA ACTACTCCTC TCCCTTGGAG ACTGGAGAAG AGCCAGGGTG CTGCCCAGGA
  TCAGGCTGGC ATTGCTCCTC CAGTCCCAGG CTCCTTCTAT GCCTTCTATG CCTTGGTTCC
  K
  ACTAAGGGTA CCCTCGCAGA GGCCCGGGGC CACCTGGCTC TTCCTCCTTC CAGCGCCCTA
  GCTAGCCTAG GATCTTCCTG TTGTTCCTCA GGAGACTTTC AGAGATCACA GTCAAATCTT
  GTTTCTACCC TGTCTCCCCA AATTTGCTCC TGCTAGCTTC TCTAAATTCC CCCTTTTTCC
  ATTCCAGCAA GGATCTTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37689297	NES09211601	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27526672					SNP	G	T	G	G	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37689297	NES09211601	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118129858 () rs orientation: forward

Symbol	Name	Function Class
Ptprf	protein tyrosine phosphatase receptor type F	Intron
Rr598359	regulatory region 598359	1840 bp distal
Rr598360	regulatory region 598360	1736 bp distal
Rr598361	regulatory region 598361	1041 bp proximal