rs27523374 SNP Detail

Summary

• ID
  rs27523374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129818233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGGTC AGTGTGCCAG
  CAGTACTTAG CCATCTTGGA AAAGGGCCAC CTGTTCCCTG CACGTGCGCG CACATACACA
  CAGTCACCAG CAGCAGTCAC ATCCTCTGAT GGTTGTAGCT GTCAATGCCC TTGTGGGATG
  AGGACCATAA ACCCCTGGCT GTGAACCCAG AGGACTCAGA GGTGTAGCCA TGTGTGTGAC
  W
  TCGTCAAAGG TCGAGGACAG TGTCATCTAG TGATTTGTAG TTGTGGGATT GAAACCTTCC
  CGTGGCAGCA GGTGTGACCC TGAGTGTACA ACTGTGTCTA CAAGAGTCCC CAAAGGGTTA
  GAAGGACAGT GCCACTTGTT AACCTCAGAA GCTCCTGGGT ACAGTTGTGT CCGGTCATGC
  ATGTATGGAG CCCTGTGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37718002	NES09179463	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27523374					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37718002	NES09179463	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129818233 () rs orientation: forward

Symbol	Name	Function Class
Rr600383	regulatory region 600383	880 bp distal
Rr600384	regulatory region 600384	within coordinates