rs27520796 SNP Detail

Summary

• ID
  rs27520796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128513597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT GCCTGTATGT TAGTCAGTGT
  Y
  AATATACAGA ACAAACATGT TCGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37722515	NES09175566	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C		C	T		T
ss321305859	CHEV_4_128297048	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27520796					SNP	T	T	T	T	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722515	NES09175566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128513597 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	870 bp distal
Rr599983	regulatory region 599983	491 bp distal
Tlr12	toll-like receptor 12	1185 bp upstream
Tssr43437	transcription start site region 43437	1477 bp upstream
Tssr43438	transcription start site region 43438	1207 bp upstream
Tssr43439	transcription start site region 43439	1179 bp upstream
Tssr43440	transcription start site region 43440	1158 bp upstream