rs27517960 SNP Detail

Summary

• ID
  rs27517960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129994392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCAGAA CCTTCGTCTT
  ATTTTCTTTC CTGCCTGAGA CAGAGGGGTG TGCCCGTGGC CAGACTATGC TCCTCGGCCG
  GCCAAGCACC TCCGCTGCTG GTTTAGATAT AGAGGGAGAG ACGGTTTTCT TTGCATCTCT
  CATCGGCAGC TCTCAGTTAA CTCTGGTTCT AACAGAAAAC ATTAAAAGGC AAACACATCA
  Y
  CAGCGAGATG AAGGAGCAGC CAGGTTTTAG ATGGGGACAG ATGTGGACGG GGACAGATGT
  TAAAGCACTC CCCTTGGAAA ACCCACTTCT ACTCTCGGCT CAGACTGTGA GGCAAACTGC
  TGAGGGGTCC CTGTGACCAG GAGTCTGTTG GCTCAAGTAG AAAGAAAGAG AAGCAAGGAC
  CAGCTGTTGA ATGGAGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717361	NES09173914	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517960					SNP	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717361	NES09173914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129994392 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1322 bp downstream
Rr600438	regulatory region 600438	500 bp proximal
Rr600439	regulatory region 600439	1469 bp proximal
Rr600440	regulatory region 600440	1970 bp proximal